Scaffold Ga0222718_10011593

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10011593
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6506
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010910	Metagenome / Metatranscriptome	297	Y
F058817	Metagenome / Metatranscriptome	134	N
F059919	Metagenome / Metatranscriptome	133	Y
F086837	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1001159310	F059919	AGGAG	MIQLDPASLAIGYAAGTLLCWYLNQTLNAKESEYEREDDGATEEDYMHYKSSIYGWNYPYDRAATDRK
Ga0222718_100115935	F010910	GGAG	MMTLYTIFGMFVGFEGYDNGKVYFGIYTPQCEYGYVVTQNEIYLDTILEKSQD
Ga0222718_100115936	F058817	AGGAG	MTRNNHGELKMDEINTTLLIAALEAEGIVEPCDDIGSHPLDWMEVVGVDLFDELWTPEEA
Ga0222718_100115939	F086837	GGAGG	MRQYNCYDIKTVNTDVEYFNCTVFVDDIDLSEAVDRQENLVAISGALENIVGEVDSFSYEEIL