NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10010536

Scaffold Ga0222718_10010536


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10010536 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6906
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F002221Metagenome581Y
F006845Metagenome / Metatranscriptome363Y
F013088Metagenome / Metatranscriptome274Y
F018155Metagenome / Metatranscriptome236Y
F036651Metagenome / Metatranscriptome169N
F058166Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100105361F002221AGGAMSNYLEESLKDKLKDLRIYEAETKVKWGNLKRIYKMVGVDFEIKFLKAEQMLKTSLRTDPPKRQIIMVEMMLRAYEQLNIKCEESGYIMIQPNAKCFTFDKKTALICDTDDEKPVLELIHKDEKDIMIFSIEEL
Ga0222718_1001053610F036651AGGAMREITLNEVGKVKPLILAKRQIRGYYKDVFTGENKVQVDEREYIVRDSLTEIAYLMGANT
Ga0222718_1001053613F001942N/AMPRKTSDQHQANSRLGALGESLVQTFLLEYADFCFPTQEKHPADLCFELNRSMYTVQVKSRRATKEKKFVFASENSRSMSDTYKNYHCDVLAFVFFYDDQKRIMFKANTSSQNYFTFDKKIITDNIELDSLQETLDALNSVPVLKSII
Ga0222718_100105363F058166AGGAGMDILGGMSNSNGDSKDYYLAFITKEQTFKVNGKTPIEFKYLQLDPATFKSGWGRYSGEYEYVWDSQFGQAETKPGDDWKRAFSCVVMPYGHDHALIWSRYSYAESTAFNKILTSFWNQMDANSGSLPVVEFKGSKEIQVGIGRSSELDFRFSKFAPRFDGFEIPAFYDKDDEPIEDTFKSPNDGLADKVQEMVDKNELSDDDIPF
Ga0222718_100105364F006845N/AMDLNSYLLEEDFEEFCRRSYEKISLACEVFGIVNDEDYYSFKERCYTQLETDYLNSIDKTIH
Ga0222718_100105367F018155AGGAGMGQNKAAVDKRREELEAERLDKSIKMYYFQKGAGEHYREIQYESGRVVRTDFND
Ga0222718_100105368F013088AGGAGMDEKIKKALWISDDLHKEVKIFAIKNNMNIETATQMVLKLGMVSYKENKNGSK
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