Scaffold Ga0222718_10010251

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10010251
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7024
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001873	Metagenome	623	Y
F002942	Metagenome	518	Y
F017125	Metagenome	242	N
F021100	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1001025110	F001873	GAGG	MKWWNVAAALAVLAGGANAEILMMSHDFTEFQHPFWATESDGKGDLIQWDLTDKCGGGAVWLNADGFHNNHMDRQYTAHGYRYGIKRIPGAPVDDISDFVTNDWIQHHRDGALEFGGNDSRGMVEFYAEQDVSLQPGFLTVTLSNDREYAVWKFNGRVVYTHESGENNLQTFRIDIPDGLDQMRFEFSGSGTADGVIEHIEYHEYSTVPEPSLGDLIDLIGNGVGGLIGW
Ga0222718_1001025113	F017125	GGA	MKRQYAIGPGLRPNVFGIWRDEPGHSMYEDDEPEPATHWTTERSERDREMSEFVRWRIARGERIAAESEKRRQRIQAARSAAAVMGADVFRAFIRGCNNGKG
Ga0222718_100102516	F021100	AGG	MNDEQRIAQAAMTIAGCIFEDADQSTLVAKLQHCCEWRNQGTGSDLTRSDRDGMRLLLDAATGISSNLCNSETGAVIRTPTVEEVCESVLAGPEGHIMVGGVQCYVEL
Ga0222718_100102517	F002942	GGAGG	MTEEQFTAFSILLEAVSVPSVSLLFAGAWELWRYSIEKGSANE