Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10009928 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10009928 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7161
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7161

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (85.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007621	Metagenome / Metatranscriptome	348	Y
F017755	Metagenome / Metatranscriptome	239	Y
F027160	Metagenome / Metatranscriptome	195	Y
F031294	Metagenome	183	N
F039150	Metagenome / Metatranscriptome	164	Y
F050773	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000992816	F039150	GGA	MRKKLVHHFAIVLLNIGKPFTRIGNWFWKKHRDVLDWNE
Ga0222718_1000992817	F027160	GGA	MPVLSSGSKFVTHAVALTTTSDTDVYTVPNNFSSHVEHLLITNSDSSNRNYTLKFYQADSAITYTLFSSHAVAGKGSESVFTIDKPLYIHQGDKLIVTADTVDTLTVVVAAEEFFDPTR
Ga0222718_100099284	F017755	GGAG	MAKRGAIIDMGRHKAVGSSWKAMDTLAFSRSYEPETRPEFRVYVTGQADAMLEQYKKDVDKADALAILDSMM
Ga0222718_100099285	F031294	AGGAG	MKFEMLDLFLIAMLMVAIFFGLAILSLYGIGYMTWLSWTMLGCSAWCLICGWGIVAYNLENRNG
Ga0222718_100099286	F007621	AGGA	MENSSTQIIPVVNNTLEAEGFALAKEWKSITKGDKARFTKSTKADGFDTRLGKLMLKLKAEGGDRIASARLKDCGIAGIDKRRRSEAMWFAANETACRDFIAKSKKGFTSLTALQAAMKPKADPKPKADTETPVEPKADEKSNVGLNSEADKTDPKSASDIALEALVQCELNGVSKAKFIAALKEQLEMLDDSTDKSVIKDDAGNVYVAAAYAA
Ga0222718_100099289	F050773	N/A	MELYTILVYLSVIVMPDGELKTYTATVNECPSTEMVISMHQRMMDTGEIVDWTARCSSTEVQLTVPKGLKT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10009928

Overview

Ecosystem & Geography

Associated Families

Sequences