Scaffold Ga0222718_10008720

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222718_10008720

Scaffold Ga0222718_10008720

Overview

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10008720 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7784
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)		Depth (m)	12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009502	Metagenome	317	Y
F091628	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000872016	F009502	AGGA	MEKKQIVTQDKYEDIYDCIVSDQVSPNETAEYLEDKGFYKYYIKRRTLGGLWRSSKK
Ga0222718_1000872022	F091628	AGGAG	MATGAEHFIRQLTIKMDEAAKQWNSTKDPSFRDQWYKLLKQVPPASALVKAPSRKRT

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