NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10008030

Scaffold Ga0222718_10008030


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10008030 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8155
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009208Metagenome / Metatranscriptome321Y
F017634Metagenome / Metatranscriptome239Y
F030744Metagenome / Metatranscriptome184N
F031081Metagenome / Metatranscriptome183N
F077250Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100080301F031081GGAMAKVERSSYPVKKFMIKSPKGETIYFGQAGYGDYDLWSRVDPEYAEKKRYRYTTSHKAILLKDGTPAWKSPETAEYYAMRGTWDEPRGNPLFKQVVAMRNKILTKEEKAFIA
Ga0222718_1000803010F017634N/AMEAIASIAFGILLTRVILTTNENYVKFQTDPGEKDSKYYAKASEVMDNSLYVTNPESLYAGFSLEPGKQVQKVPIGPVVDRLGNVKEIPGLPSRDILYPIKEDVDLEIEKIPVPGSGSSEVEIFPTS
Ga0222718_1000803013F030744N/AMADATGVVPALNPAEAVYFISLYFFNYFVLQLVSKIMNLLNKTEPDEDSDEERTATFQEFFTLLFYLLSVISLMFITLQAKGSSRPATFSGLIVALIAVPSSLGQFDLFNDAYAKYLVPLGVSLITNYYIG
Ga0222718_1000803016F009208N/AMADNKSSDGRVTAFTLLFAFAVVLAAYLSGPENNFWMAPGAIMYMVLLLSISIPKWWILGDDTNLNKNLGVVIALLVVPSIMAPILGVKTSTNVYNYWRSIMIPLYVGYALKKRGMPGSSVLVTFSTPLVVMLSMIFSINPLPNVKIPGTNVTNN
Ga0222718_100080302F077250AGGAMNLYFIAFLFALVFIISYKPGSGTLQKWFGVKEQMHHEMMEAPEVMAPSYKVTSRDEINARELDNIFGNQR
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