Scaffold Ga0222718_10007244

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10007244
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8686
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020467	Metagenome / Metatranscriptome	224	Y
F028356	Metagenome / Metatranscriptome	192	Y
F037128	Metagenome	168	Y
F104763	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000724410	F028356	GAGG	MFFKLTSRNAYRDLVRNSRRICVAAISDQEKSSAFQELYTLLQGKLDETERSLNSQPAYAQRCEHWNQREIRSIKPVTNKNNPWLRFKREFVDAMSQDAEFHAKRVSTALAWFYADPWKDDWIR
Ga0222718_1000724417	F037128	N/A	MTRRIKKPLKDFFDNHSLTDAEKSFILGCIQAQNKFPQLTQRQWDIVCDIEKRYNNGKNSRSAQTSKRKN
Ga0222718_100072446	F104763	AGGA	MPSYKIVLFSDSLTQQYMSEQEQAINISIPEVTTEQATHEDARLALYSKTPTRMPCIMIFKDGARMQTKHAKRDHNQVVTWIKTIVGV
Ga0222718_100072448	F020467	AGGA	MHKRPTLQEAKLFLTQHSPDTIREYEQLVESHGEFFAARFIVDIVDHFNHLHEKAING