NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10006887

Scaffold Ga0222718_10006887


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10006887 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8973
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005315Metagenome405Y
F007006Metagenome / Metatranscriptome360Y
F020467Metagenome / Metatranscriptome224Y
F028356Metagenome / Metatranscriptome192Y
F037128Metagenome168Y
F104763Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000688716F037128N/AMTRRIKKPLKDFFDNHSLTDAEKSFILGCIQAQNKYPQLTHRQWQIVCEIKERYKNVKISRSEEITKR
Ga0222718_100068872F104763GAGMPSYKVVLFSDSIHQQYMINQEQAINLALPQVATEQATHEDARLALYSTTPNRVPALLVLKDGARMQVKHAKRSHEEIVAWIQSIVGV
Ga0222718_100068874F020467AGGAMHKRPTLQEAKAILIQHSPTTMEEYELLKTSHGEFFAARFIVDIVDHFNHLQEKAING
Ga0222718_100068876F028356GAGGMFFKLTSRNAYRDLVRNSRRICIADISDEEKSSAFQELWQLLHQKLDETERSLTVQPAYAQRCEHWNQREIRSIKPVKNEKNPWLCFKREFVDALSQDSTVHAKRVSTALAWFYANPWKDDWIR
Ga0222718_100068878F007006GAGGMEKALQQEIRKEINRIVDLMIQADSIRESIAELKKDIKNEYGLPVTTITKVATIIRKQNLEEEEQKWEEIKEWVDACS
Ga0222718_100068879F005315AGGLGASKLGIDQELPTTKISSFMHIVTCGDSFTQGEGLENVQQAYPSIIAKKLNAKLTNLAQSGASEYLITSQVEQAVKINPDLIVIGHTSEYRWQVWDFRRDHLQGFLVANWIEKHGKSYRNWIFSEQLVGNRRKDTREHKAAWHAAGMLYYSEHELVERLWSSAVARQIVACQRASIPVIHHCCFSHLQPALENLTDDYVAYHLDREKYKNFAPDRSHAGAQCHLELAQLITNKHRPIL
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