Scaffold Ga0222718_10006326

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10006326
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9455
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020895	Metagenome / Metatranscriptome	221	N
F046082	Metagenome / Metatranscriptome	152	N
F065209	Metagenome / Metatranscriptome	128	N
F097361	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000632612	F046082	AGGAG	MAANIKLTQRMLNKSEINANKTVKQFLWDDFGMKYTDPFFEMGNKLTVIGEYIDGEEAHINFFRRSGRGDTMLSIQKLKQYADAGNGVRLISDSKSDGDGTRIFISVYTTGSETDAA
Ga0222718_1000632613	F020895	GGA	VFCLMMIVHGIIMPSIKAYEIVLEIDGQESCITLDDTFPAIDSWASACSMAVLMAKHIHPDKEVEFVSCAEYEADEYADIGYVYDAPVVLQ
Ga0222718_1000632617	F097361	N/A	MLYLLFTPFAGYFAMLITIVIMHSVGCDVRGVNTFTIWCVYIQIYVYLFVITKLKGKTDE
Ga0222718_100063262	F065209	AGGA	MIRSMTQEERERATERRLINMTTSKSICEIRLHNAMVRNNLTLEECINAIDTYAEDKKFHEHLDSLYNVEQDTWDDWHDGDIK