Scaffold Ga0222718_10006133

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10006133
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9615
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013421	Metagenome	271	N
F017147	Metagenome / Metatranscriptome	242	N
F018943	Metagenome / Metatranscriptome	232	Y
F020191	Metagenome / Metatranscriptome	225	N
F074760	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000613313	F013421	N/A	MTNFKYYYNNVPGKGLCRNNLIYTSLINEDATEFCMWFHNDSEYHKGHNEVVDPKLMEMKYTREKDFLLTLDVDYKQIIPRKTRFDPADQKIYFEIQGVDFWEQSHGKAFEDVLPNWQEQMLYIMETHKKLGIYKYSLHPSSYFVIDGELRTINYFFAYKQHEPAITVQEHMSHISQERQKELLPKMKELGIETNKTYPFDKLQILCLESFRNVYPDSFINKAISIYK
Ga0222718_100061332	F020191	N/A	MSNLENIRSLYQSSAYHDILHDVNGVIFPFNPEWKNIGISVSGGADSALMSVLLCSIISQLESNTNVHIITNIRCWKTRPWQKQNSLNVFNWITNSFPNIQFKRHENFIAPDLEWGSIGPNIQDEYGKLKSGNQIELRAHAEYVAHTENLDAWYCGVTKNPDKEFDGRLLDRDIEDVTLDRLIKTHMGGLACHPFTHVQKDWIVAQYKKLGIMDLFDLTRSCEGDNQTYPEIFGDLDYKTYVSGSPVPVCGKCFWCKEREWGVSKCQD
Ga0222718_100061333	F074760	N/A	MMLQKLEAKTNSKILFDLVKHLPEGKNALNKPTGNFFYDPWELLPEYKDTAIEDLLKQLPDHGEARVIVLKPGESYSAHADVDDRYHVTLDAEQSFLHDIENETMHATKPDDTVYLMNAGVLHSASNYGYKNRYQLVIRKRLQSNRMMNDPRQVVMTSNDPVYNLRYLFDSSFSILLNRLAKEQSIDAFARINEHTIKFLCDGSKINELLKMQQICGFKIDIVYA
Ga0222718_100061334	F017147	N/A	MPNWKHFYKHKQGLAVANMLYQPLVSEDNTVFCMNWNPNDYFENESMNEELYNFWFDQEVVYLSKLKDTKYIPELLDIDYAKREIKFKWYNKNLNVLIETNQIDKIPNWKEKIKQIKQDLEQQNIYKINMYPHTFYFDDNNEAHCMDLYGCTDNDNRYLDIKYLKPLIRTDRFDKFIMNNQLDTHELYKETIRTNYAEWPGDFLNA
Ga0222718_100061338	F018943	GAGG	MRIAITGHTSPMGKDVHEHYSKTHECLGISRATGYDFTNTDSVNDTVSEVLARDVFLNIAHVGTTQSTLLMKLQQRWTQDAPLQKVITIGSLATKVPKKLLDQVGIDKQYLKDKQHIDAVHNVIANEIPFGSQLKFSLVRVLNYGEKTGDRSGEPTCTAQDIIRTIDYVINESMYISTLDVRRF