Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10005166 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10005166 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10651
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (61.54%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10651

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (61.54%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044458	Metagenome / Metatranscriptome	154	N
F054888	Metagenome / Metatranscriptome	139	N
F087135	Metagenome / Metatranscriptome	110	N
F094536	Metagenome	106	N
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000516611	F044458	AGGA	MKTKEKPKYSNETLKLLDEYQKFKNDFHMSWGDQKRIDRLISVDLKIKFMKAEQIFREAALERNDVKTAKMIDMMYRAYSALEEEMQTLGYKPLEPHIRCFDWDGQIWYVTDLDYEVPRAMQMYKSEGKANFISIQELLRCIPKELMDMRLELAVMFEGSKFVRIEKK
Ga0222718_1000516615	F099546	GAG	MTRQKKQISIETLKRQIDKGKSLNEVSVSMGKSKSTILKVAEENGLKFDNKSHWANL
Ga0222718_1000516616	F094536	N/A	MRVTLKSNLKQVRKDLNKKLNKNDFNKMMAKAMNYTGEKIVNAERSHLYKKLDRPRPQTIKSVVISQFAKGKSNKLAMTVRVKDYASKFLHYIYSGDDEPARRSSYPSPTRDAKSKQGKFGNILQLNTKGGLLKRIDKTAKASRKGSRFQGVPKGEGSKRYGIWERQGTKGKEGLNLLVAFTPFIKHKKFIDFFRVGEMVIKNNLHKELHKQFLRHQKKRG
Ga0222718_100051666	F087135	N/A	MTQYTDLIKLQALKNEIDKWSQKIKSHYMHTMYGDGYYEIVFNDDSREVMYNDGSVKRTESPHDFEQLVRLYEQDHGEQW
Ga0222718_100051669	F054888	AGGAG	MDFFEENSGEGNGSNSYLKFLAKEKAWYIGENVYDMEYILLDPDTIQTGLGRYSGGYEFEFSDIPFSKVENKEGWKKAFSVWAFTSDKQVVQWERAAWGELQGFKSMCEKFWMQKAANEGQLPCFRYLGCRGVKFDSGFSSEVPEFEFVAWKPRPAEFVIPAWASDEDVAAPVADSPVKKTEISEDDIPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10005166

Overview

Ecosystem & Geography

Associated Families

Sequences