Scaffold Ga0222718_10004645

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10004645
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11335
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033826	Metagenome / Metatranscriptome	176	Y
F051947	Metagenome / Metatranscriptome	143	Y
F089555	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000464512	F033826	AGGAG	MALCSASDVEQFLQVDLNSTVEASVTNTFIPYVDAAIKRYLGHDIEQATFTEIFDGAEQQDLFLRHIPIASITSVTEDGNTLVAGNEKDYVHYDNGKLRRITIRWSGIKPKNISVTYVGGYQSADIPEQIKFTSAKAAARMVMTALQISAKADTGEVGSHLADNTSTSSFDVPITERIGDYDVAYGDVVIQSLTPVLTQADMAVLNPFKSRFFV
Ga0222718_100046456	F051947	N/A	MGIKKVGVHPHQTMKFPPDGEIIFREWAINTPIITSVCGTRIATRLPRNAELPFLTFFVAGGTMLSPQGDASIGNIIINVNAFAGRWGSGSGSQPDYATALELANAVAEAAFKTGKTIVHTSTTSTKSVIYGFDIPEMPSRIEETETGLGHYELSLSMYYRGLD
Ga0222718_100046458	F089555	N/A	MPIPHRFLPETATIQTVSDTTVDERGLPSDSWADTYTDVKCKFESLGAEEDREGRNTTIESFNVFIEKGIAVTPGDRLLRGSDYHEITFVQPLLDRYGVECYKMLQTFVSK