Scaffold Ga0222718_10004295

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10004295
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11909
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006271	Metagenome / Metatranscriptome	377	Y
F010653	Metagenome / Metatranscriptome	301	Y
F017421	Metagenome / Metatranscriptome	241	Y
F043151	Metagenome / Metatranscriptome	157	N
F046716	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000429510	F017421	GGAG	MYTLEKRKMIYIMTRKPVWYHTHCITPWRGNPIYHDPEWVIGDCELCRMDVDGQDWWNGSSYRNSQKRLFDNIELNKKYWY
Ga0222718_1000429514	F043151	AGGA	MIPYTAQENEYLSSGSYRKSNTNKQRRVKQEPDLRKHDWAIRTTIEVDGRTYIVPVQV
Ga0222718_1000429515	F010653	N/A	MLMTLCAVAFHDNTFAVFDLKEQLQWLQINLWELLHQLEYVEPHQREIVYREIQHIQSEIDSVVDLLVQHDQAQHPQP
Ga0222718_1000429524	F006271	GGAGG	LVQRALSKRVWSVIGLMLIYGNTPRDIMNMMWRRRYRVMSVIAVIVIALMLAGCTVGNRKVTPPLKALDAFWDTLGSGKNKTKQDSTGVE
Ga0222718_100042959	F046716	GGAGG	MFGWIKKLYKRYERFTLEQYDVSPVVYKIGTKKYIKKKQFSKSPVPRTRYEK