Scaffold Ga0222718_10004055

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10004055
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12311
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (70.97%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016625	Metagenome / Metatranscriptome	246	Y
F020366	Metagenome / Metatranscriptome	224	Y
F029286	Metagenome / Metatranscriptome	189	Y
F101299	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000405518	F029286	GGAG	MANYYRVSPKWKKSVFEYQTYRDEEKNISFTTEEMYRWGHCVVKVEEGEELNDIIGDPNDSNNEFEFDHTMVDDIEVDDQCSFYFENPKGITTEELDENFEEDGYDYLEKFGEPDDFYTIYHGELNVEDVTKDYDKPATNT
Ga0222718_1000405527	F020366	N/A	MITIDDIKRLKDPDKLKKHRLENLAKACADAKSNEMKSMWYNKLIELGKQYNMSDYVMRKLVD
Ga0222718_100040553	F101299	GGAGG	MLNEIVTIDILNLALDQIDDGRVADARDTLISHRDKLQNEIDQFEKWAETQSNIDTSIQLEVDKSLGK
Ga0222718_100040556	F016625	GGAG	MRTLMMLTIITLMTMAIAKSEEATIDTKVKNYIVNEWNDIKEYQKINWQKGKEQTANNWNTIKSFFIKVKNNVTQD