Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10003747 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10003747 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12917
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12917

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F006845	Metagenome / Metatranscriptome	363	Y
F037180	Metagenome	168	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000374710	F063662	GGAG	MQTNEVTFNIVGAGQIRLPKREIRGYYKNLLTGDTLVQVGNDEHKVRESLTEIAYLMGIV
Ga0222718_1000374714	F093807	AGG	MKLKRTMTQYSDIVETQRLKLNKQKDEWYIHVNNGAGYTEVKQGDTLTITYHATGKKEIFIDAN
Ga0222718_1000374716	F006845	AGG	MDLNSYLFEEDFEEFCRNSYNKIQVACEFLGIINDEDYQGFKERCYSQLETDYINSIEDLTIH
Ga0222718_1000374717	F038657	GGAG	MSILGGMGNTENKQQIYLGFKTMGQRFYANGETEVDVKYLQLDPETFKSGWGRYTKADGFQYKWDAKFGSVEPKPDEDWKRAFSCWVMPHGAEHAYLWQRFTFAESSAFDSILDLFWNDRANNVGKLPVVEFTGSEIIQVGMGSSSELSFKFSKWADRFDGNAIPDWYIDPDAPTDDDDGFVSPNEGLADKVNDMIVKTSELSDDDIPF
Ga0222718_100037476	F037180	AGG	MSQIAKVDDKSSLNISLSYLLQIIGVSALAVWGYAHTTERIDFNLRETQNLRANQNKYIFPDIRVLEEQVIKLEKEVIILRTELEAYKRTNNENTK
Ga0222718_100037479	F001942	N/A	MANKTSEDHQSNSRLGALGESLVQTFLLEYADFVYPTQDKHPADILAEINNAKYTIQVKTRRESRQGKYTFASETSRAMSEIYKNYHCDILAFVFFSQEHKRILFKPNTTSQTYFTFDKKIITPTLEIDSLQETLDTLSQVPVLNPLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10003747

Overview

Ecosystem & Geography

Associated Families

Sequences