Basic Information | |
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Taxon OID | 3300021958 Open in IMG/M |
Scaffold ID | Ga0222718_10003377 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13729 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (66.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 37.6183 | Long. (o) | -122.2916 | Alt. (m) | Depth (m) | 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011190 | Metagenome / Metatranscriptome | 294 | Y |
F019751 | Metagenome / Metatranscriptome | 228 | N |
F053965 | Metagenome / Metatranscriptome | 140 | N |
F065664 | Metagenome / Metatranscriptome | 127 | N |
F077161 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0222718_1000337720 | F065664 | N/A | MAGVAEIMCEYGAGDKVLQLEQFDTMGFYEYYGVTETFKDLQSLVKRAEDIQTSYDRIVIHDYSEFKLNFPKNKVVLIFHGSKLRSMEQTEIEAVKEYPCFVTTSDLLEKLPFATHLPAPFDSELFKTDVEGYGWIAINRSYQRDIVEKRIREKYPEVQYYERNPGNIIRYEDMPDFLSQYKHYVDWKFTNDAEPVSLPDPSCTGIQALALGLTVHDKDGGTLSPHLLLIHDAKRVVQRFIDEII |
Ga0222718_1000337721 | F011190 | GAGG | MKLFEGFVNGLKKSFSGKDYLREINTCRRCGKPCFFDSCLKCETDEAYRGWGKNK |
Ga0222718_1000337723 | F019751 | AGG | MTRTRGPDLSKEFHDYIFNQWMFFSENAYGIANKINNSTELMSKFGKTSPAGVHYHIKQIEKDLENSISEDAMDTYIGEFMRARTGFEHDVDDIQTLMSHEKEKGLEDMDKELYLKMARFRHEVKLDSFKMLQDSALPLQVKKLKMEREKLRPAKPMPKVEDHGVSQ |
Ga0222718_100033773 | F053965 | N/A | MVQNIMTQYVRWREKLGKLADAIKEYKTSPINSPAERAAKEVIIQITESQWWKDNVGREFKMPKKYDNKKQMFGFTEPQFVFIDNFIFGRHEFCENCRLYKGLLTYNSGQMLYAKPYIT |
Ga0222718_100033774 | F077161 | GGA | MRNLTLPEIQARFDRHAKLHRFEVDKLFEKVKHKPFTEIQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYCGILRDIVTEEIEHVQDSITKSDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTNQQDLIPGYGYQFYGDTWRMMKTTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVKMTYEGLKRAELFNNIGRAKA |
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