Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10003377 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10003377 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13729
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13729

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured marine virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F019751	Metagenome / Metatranscriptome	228	N
F053965	Metagenome / Metatranscriptome	140	N
F065664	Metagenome / Metatranscriptome	127	N
F077161	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000337720	F065664	N/A	MAGVAEIMCEYGAGDKVLQLEQFDTMGFYEYYGVTETFKDLQSLVKRAEDIQTSYDRIVIHDYSEFKLNFPKNKVVLIFHGSKLRSMEQTEIEAVKEYPCFVTTSDLLEKLPFATHLPAPFDSELFKTDVEGYGWIAINRSYQRDIVEKRIREKYPEVQYYERNPGNIIRYEDMPDFLSQYKHYVDWKFTNDAEPVSLPDPSCTGIQALALGLTVHDKDGGTLSPHLLLIHDAKRVVQRFIDEII
Ga0222718_1000337721	F011190	GAGG	MKLFEGFVNGLKKSFSGKDYLREINTCRRCGKPCFFDSCLKCETDEAYRGWGKNK
Ga0222718_1000337723	F019751	AGG	MTRTRGPDLSKEFHDYIFNQWMFFSENAYGIANKINNSTELMSKFGKTSPAGVHYHIKQIEKDLENSISEDAMDTYIGEFMRARTGFEHDVDDIQTLMSHEKEKGLEDMDKELYLKMARFRHEVKLDSFKMLQDSALPLQVKKLKMEREKLRPAKPMPKVEDHGVSQ
Ga0222718_100033773	F053965	N/A	MVQNIMTQYVRWREKLGKLADAIKEYKTSPINSPAERAAKEVIIQITESQWWKDNVGREFKMPKKYDNKKQMFGFTEPQFVFIDNFIFGRHEFCENCRLYKGLLTYNSGQMLYAKPYIT
Ga0222718_100033774	F077161	GGA	MRNLTLPEIQARFDRHAKLHRFEVDKLFEKVKHKPFTEIQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYCGILRDIVTEEIEHVQDSITKSDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTNQQDLIPGYGYQFYGDTWRMMKTTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVKMTYEGLKRAELFNNIGRAKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10003377

Overview

Ecosystem & Geography

Associated Families

Sequences