Scaffold Ga0222718_10002714

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10002714
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15657
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (31.03%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020115	Metagenome / Metatranscriptome	226	Y
F025275	Metagenome	202	Y
F025729	Metagenome / Metatranscriptome	200	Y
F029600	Metagenome	188	Y
F082629	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000271426	F025729	N/A	MNKAILDRLVYCEETYAGESETWQDPVTGDYYYVPIEIVRDWDNAMNLNDEN
Ga0222718_1000271427	F020115	GAG	MTPEQFEIFRQWADRVANTANDTDTHIRPIDIVHDIAGILSNDEHFLPRL
Ga0222718_1000271428	F029600	N/A	MKYWNGKGQYQDLFDKHFKSLVPEIGRADTADGNALRAIAKTNYDVFNNGAGNIVNQYEEMDDDGDYYTGYEINRWWEEYFDDIEDYSRLDVDRLKRKIIEYVQYDKDYGLSDLLDDYIDHIVLKVGNQLVAK
Ga0222718_1000271429	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDKALEAKEKLRAILMDDDNAESCTTTTDGMQSVINFDSDEREHEIVRIIPVKPTWPETPWVREYLIWNQMDCEAPFDGEYLPTDMAVLKDLCERLEAVSDTVSTDTLHEFIRDLFYNGDAMFDADDICI
Ga0222718_100027149	F082629	AGGA	MEKLKKQKTTQADSQRGSQSNASGLIYWDDYNFDNQTDTAGYLKEGFNIIYDAPTRRNAN