Scaffold Ga0222718_10002571

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10002571
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16194
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (22.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020115	Metagenome / Metatranscriptome	226	Y
F025275	Metagenome	202	Y
F025731	Metagenome / Metatranscriptome	200	Y
F029600	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000257116	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDKALESKARLRATLMDDDNAESCTTTTDGMQSVINYDIDEREHEILKIIELKPTWPENKAISEYLVWDQVNCEAPFDGDYMPTEMAVVKDLCERQEAVADTFDVEAFHEFINDLWYGGAAMFDADDLCIYYFKMPKVYYPSQPVEFKS
Ga0222718_1000257117	F029600	N/A	MKYWNGEGQYQDLFDKHWKNLVPESGRADTAEGNAMRAIAKINYDIFNNGAGNIVEQVEEMDEDGDYYTDYSINRWWEEYFDDIEEFAGLNVDRLKTKILNCVKDDRDGGLSDMMDDYIDTIVLRVDNQRVTK
Ga0222718_1000257120	F020115	N/A	MMNNTMTHEQFEVFRQWAERVANTANDTDTNIRSIDIVHDIAGILANDEHFLPRL
Ga0222718_1000257124	F025731	N/A	VVGNSANLNLSLMSHNTDTQRKKAQMASALFNDVQFLSMDAIRNTDAWDSLSCDDQMRLEDLVGQAY