Scaffold Ga0222718_10001815

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10001815
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19803
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026881	Metagenome / Metatranscriptome	196	Y
F046384	Metagenome	151	Y
F088901	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000181514	F026881	GGA	MKNKKYTTKERFKILESTVATLYVAIEKLSRRVDVVDEFLTKATKDFKDE
Ga0222718_1000181526	F088901	N/A	MVEVKQGKVTVYKNNTTKVYTLKEYTDTIYYRKLYTRIYQIICLLATMFIPAIMINLFK
Ga0222718_100018156	F046384	N/A	MKNETIHETVKDLYTFKNMQIDALQKELCRANKRITNLETFIFELCDDSCPESYKDIVKKEVLNDFTRD