Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10001326 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10001326 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23951
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (28.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23951

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (28.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006322	Metagenome / Metatranscriptome	376	Y
F016811	Metagenome / Metatranscriptome	244	Y
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N
F050369	Metagenome / Metatranscriptome	145	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000132615	F050369	N/A	MKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERASHLAVLNVMRLVNRDEEFEDEAHMTGIVMSSFRYAILNSYTNSLTANEKNLEVRNESEVTYGDGSEEYSKYQESAVSNDKEIDNLLDVVRDYAETKLPYLERRALLECVIGESTMKELATDTDTTVRQVHLAKQKAIRRVKKLIGVLDENEKKYGEQTDNGKYISPSRSKLQIAIQLEPIRRDEARERDYSKAMSFIHTPPKV
Ga0222718_1000132616	F035552	GGAG	MKVEDDLLIQADLSTLYWVLGEVANKVKEDNDFIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLRYDGTVEALNLKTKILSQVMNEKMDEDVNNQF
Ga0222718_1000132618	F077286	GAG	MSKLRYTVEWEGDVANYKQDFESIEEARMAMIMHHNRNAVMKVGILKED
Ga0222718_1000132619	F031255	N/A	MIKYFNEVVAELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVRLTTNKRRYLKADEFLIENYE
Ga0222718_1000132630	F006322	N/A	MPAKRNKKGDVVSGRGSELTTLQSEFLEGIRNNGMDASNRIAKELNYTNYYRDRRTSGTAFHKELMAIANSEMRSIEAAKGTNLSALIKIRDIALANDDMKAAMEAIKIINDMQGYKAPTKVEQTKIDITATIDLTAPEEEQDYLDIDAD
Ga0222718_100013266	F016811	N/A	MSDEGQMIYDVGVRLAWKKKRGNGYTNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKAVYDFHIIEEFYRKEISNSFSHKEEDYSKEFGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10001326

Overview

Ecosystem & Geography

Associated Families

Sequences