NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10001306

Scaffold Ga0222718_10001306


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10001306 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24139
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (70.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009725Metagenome / Metatranscriptome314Y
F044515Metagenome / Metatranscriptome154Y
F047691Metagenome / Metatranscriptome149Y
F047972Metagenome / Metatranscriptome149Y
F066270Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000130622F047972GAGMRFVEFAPDQMIDRYVIVLKNLIGRASAKKVPAKLNWAGLNKILKSNDASLAADYETFKAMYDSSPALQNLVKNFNADGLELNVPGAADDETPTDGTTDAQAAVDQTAASAAPQQLAQQT
Ga0222718_1000130627F044515N/AMNRMYYNTIMMSTIFFMVFGFLLSLYGLHIDAHNIVYVGVSIMSGVCAVWWFWVMFVIKDMFNRVEKAADKMTEVKEELGGIRGLIAKLFEREKDK
Ga0222718_1000130632F066270N/AMRISEVLDIRYSAFERPGKMHTIGDVYGKKNLKVPHAKYVDKTNRQKKLLKK
Ga0222718_1000130636F009725N/AMKNTFANIGYARAAAQLASQGRHDLARDLMMAGIKEVQEKKRAINRLERVKKAKASYEPGDHYFKGHKVAFWRGHADA
Ga0222718_100013069F047691AGTAGMKCEQGDLAKIIFSVRQENIGKIVLVEKYIGKYKQGERFEFRGVACMCPVTDHYWWISGQGLSNMFGDTEKAYIADSWLEPLRPDAEKMKSKETKPQEIDVAA
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