Scaffold Ga0222718_10001244

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10001244
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24984
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (85.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F029779	Metagenome	187	Y
F055714	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000124435	F055714	GGAG	MRKWTSTSVVINSATEEMVKSALKDGWNFEVLTEGEHLCEESIDFDEIMENIHAVDGILEIHIHKVGEKSDWCNVILHNGDPDCEISDCTADGYIDKWTERTDFGQKPWNDGFK
Ga0222718_1000124444	F013187	AGGAG	MPTKKIKKKPVRNTWVWIFGDEMQEIWEHFGFPYPDPDDRMKLKFVKYESKEMQDG
Ga0222718_1000124445	F012581	AGGAG	MAKYTLYAKKVYYYRKEITAQDSKSAEKRGADYEADDNAERLFEPTGEEFYITSIEESDD
Ga0222718_1000124446	F029779	AGGAG	MSDTEKYEELCQALVGIDATERYTHEDILSYVYNLKKTEEKFYDNKN
Ga0222718_1000124447	F008925	AGGAG	MTTKTKPKIDAVTLNLVNALKQMDDKLNEGSWEYINLGDVLRFQDVYNETIKHYDLKKEGGIHDYGADKGKYQQFYYSDYVCHTNPNAYDPSKVEEEEDE