Scaffold Ga0222718_10001216

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10001216
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25373
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (65.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007006	Metagenome / Metatranscriptome	360	Y
F020467	Metagenome / Metatranscriptome	224	Y
F024584	Metagenome	205	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100012162	F007006	GAGG	MEAALKSELKAEISRIVDLMIQIEAMRDKISALKKDIKEEYGIPVATITKVATIVRKENLNEEEEKWEEIREFVEACS
Ga0222718_100012164	F024584	GAGG	MYFKLVSKNAYRDLVRNARRICISQISDSEKSTAFKELYETLKRRLGETTRTLNAETAFAKRCIHWNQRDIPLIRPVKTLRNPWLRFKREFVNGMDAKDAPKRIEIALAWFYASPHRDDWISN
Ga0222718_100012167	F020467	AGGA	MHKRPSLPEARAFLSQHAPDIIHEYKTLIDTHGEFFAARYIIDIVDHYNHLNNIGVVNG