Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10001181 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10001181 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25935
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (64.10%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25935

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (64.10%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029403	Metagenome	188	Y
F049560	Metagenome	146	N
F056535	Metagenome	137	N
F085567	Metagenome	111	N
F088533	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100011811	F088533	AGGA	MIPQEIMQEFNKKYFKRDNQYYKLSELNIAFKYLKVYPLGGGFQTTIKLDDYFLNKWREGEYTFTDEMPVVMETGKFGFDVWQGDYIKGWHNPFDRWNGWRVPWLTIEGLRQFNKIQDKYFKDDGNNRPYFLFEEDKVLYWDNQEEEKFILEPRIFNLGGWDQTPLYDVSLGLTWDMYDDEGEIA
Ga0222718_1000118113	F056535	GGAG	MKYGRHGKLFPLEMNQKALFYLQMFLHEYKNKGLRDTDEKRRSYDHALDQIRKGINGVHAHQNMNNLRPPRTYNFRNK
Ga0222718_1000118116	F049560	N/A	MESGWHSLQDAMKTTPPEVLSVGYVLKETKEYLLLAADIGSDKMDNDVGRVTVIPGQWIVDKKLII
Ga0222718_100011816	F085567	N/A	LGVFKSKKFNRNISFWCELKLTKGNKLNLSPFQISWNLKRYSLCKDNFIMAKGVEQRAIYFYPGSMVRELATDFTSVEPLFVVHQPWTHDLEPALERVLVHVP
Ga0222718_100011817	F029403	GGAGG	MDPRQYKATISQNKAINKFLEEGYLVFTNVCEQGPIDIIVVNPKNGRTHFLDIKTSKGNTIVKGKNVGGSGAKLKPHQKELGVRLCLVEGDEIRIVEKRETINQRQRKEKKFLNKARKGIDILEEC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10001181

Overview

Ecosystem & Geography

Associated Families

Sequences