Scaffold Ga0222718_10001108

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10001108
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27097
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004479	Metagenome / Metatranscriptome	436	Y
F032990	Metagenome / Metatranscriptome	178	N
F050748	Metagenome / Metatranscriptome	145	N
F064737	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000110810	F032990	N/A	MIPRIKLYAETLYPLLKWYDENPDDKDTKYAISRIIRFSSDNPRQHGIPYMYSLGALNEAKKMEIPDAEERLQWVRWKEQNHKSGLRDIGRQNGIFHQEHIVPVSQIAKKLYDLEKITVKNIHDVLVDNLKIAWILKTEQKTLDAVCRSGVRTPKLLTSLDIYIKGFNC
Ga0222718_1000110823	F004479	N/A	MHTGKVLVGNSGDRVYLQDNKVIKEAGVYPIKFKQQMDWLANCTHPNFIKIKPISDTSFEMKKYPTWYDKICEQPLIKSIDQLDDLIHIVNDFDGYGTDVDTRSYLDKLEGRTGYTYEGNLDASSGWGFVHGDLTVSNILYDNDFIFIDPRGTEEQNYYDYGKLMQSFVMKYEAHIYNERNSKYLKFCREAENIMYEWYDEYQLKFFLAVHLLGAVPFFELNERYELAGMFLKKGHELFDELEIKYSK
Ga0222718_1000110829	F050748	N/A	MKDKALAIGVSSLEFTNILCSYYPKGIKEKFDIYLFVDNTKIDLDKLTGIFEEHDLDIFKNAQIIILNDLYDYYIKKHGYEGKSKEFLLSHGCLFKILMPIYLKEKFGVKRTLVSDDDVFILNDLSYMWDEYEEFGIKKENLFYIRNKDKYDVMGAFNEIFETDFTLEQMNALSINAGNIIYGDDPKLEYYFERFMKHPFIHHQYFNFTGYTSWTVEQRFHHFNIHRYLAEGRKVKFTESKDLRLMQNRDKMMKAGTPPDKYLKVVVPSIIHYAIGVKKPLWLNDFLPGLEWRYGFKYKAKYELKDILYDKNWTPPSFKSIQKNGFTLKKDLITKSVF
Ga0222718_1000110831	F002407	N/A	METTINKIDGYELSSFVRKLLPIDKFIFMKIAKEGTVSSVYFPERDAVKLVNTPTSDIFDADIKEPVKVSFYNGTKVIDALSHFNGDVKGRIKYTEYDGELMASDFILENEDLQINLACTDPSLSFMEMSKEETDRAFGTDSKMFSFDLLTTHVDKMKSLFNLDKDEDIFTLYIGEKGINIKGTSYDATLCHSYDSDVEKGAKVVIYKKYINLLDKENYKVSVCENKVVFKSLDTNTHLTVAVAITDED
Ga0222718_100011086	F064737	N/A	MKNNWFDLDPEDGFDPQDHNIEMDEIAKMYATADMEDEQKTWAKKQAEKFYSDFDSLSVEESILAVKSLIKNEGVTLSEANTLLDNMIQVFQDDEEYEKCHICLQIKNGIND