Basic Information | |
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Taxon OID | 3300021958 Open in IMG/M |
Scaffold ID | Ga0222718_10001098 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27214 |
Total Scaffold Genes | 50 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (78.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 37.6183 | Long. (o) | -122.2916 | Alt. (m) | Depth (m) | 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010091 | Metagenome / Metatranscriptome | 308 | Y |
F014085 | Metagenome / Metatranscriptome | 266 | Y |
F020902 | Metagenome / Metatranscriptome | 221 | Y |
F023355 | Metagenome / Metatranscriptome | 210 | Y |
F037248 | Metagenome / Metatranscriptome | 168 | Y |
F050774 | Metagenome / Metatranscriptome | 145 | N |
F062777 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222718_1000109819 | F037248 | AGGAG | MLPDGMKQANPPDKYGGRTGKKPTLLTDEKVKVLLSMPGEWFIIGTRDKWISGVKANIESMTQTNISHLATKGKFEIQQRKNEDGQIDVYCRFVMSTLEEE |
Ga0222718_1000109822 | F010091 | AGG | VREEAELPTDIFISLIKIISMTIMKYMNIDKLLEEAETGKRSAIVDRITDEAKPFWQGCEERVAAGRELKPYVVSRLLRDEFGIKISESAVRNHFQNIAEANE |
Ga0222718_100010983 | F020902 | GGA | MDEFYDGEFWDMVYQEYGVVDELDILSENVLEIIQPQPGLIILITKDFYDQK |
Ga0222718_1000109836 | F014085 | N/A | MDNLSEMREQALKRAGNVCEWAYCTDNKWLELAHIKGIGMGGSKKRKFDFDNVAILCKHHHDIYDGRQRVGTSIAYRELLMGYLQRESKTI |
Ga0222718_1000109842 | F023355 | N/A | MALPGAYVNRSNIPGQYCANCKYYSNNYCIAFKEQVAPYGWCKAWKGVEDEIRST |
Ga0222718_1000109845 | F050774 | AGG | MSQIKIDTKTLVPIVLSALVAVIGWLFNTIEELQVAHAAMMEQLRILEKDLDMQESLFSELLFKIGG |
Ga0222718_1000109848 | F062777 | N/A | MDFIIGFLLGYFFKETVSYLKRLAISTPKDWDKEWDWMSPIQEDDLP |
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