Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10001098 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10001098 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27214
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (78.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

27214

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (78.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F020902	Metagenome / Metatranscriptome	221	Y
F023355	Metagenome / Metatranscriptome	210	Y
F037248	Metagenome / Metatranscriptome	168	Y
F050774	Metagenome / Metatranscriptome	145	N
F062777	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000109819	F037248	AGGAG	MLPDGMKQANPPDKYGGRTGKKPTLLTDEKVKVLLSMPGEWFIIGTRDKWISGVKANIESMTQTNISHLATKGKFEIQQRKNEDGQIDVYCRFVMSTLEEE
Ga0222718_1000109822	F010091	AGG	VREEAELPTDIFISLIKIISMTIMKYMNIDKLLEEAETGKRSAIVDRITDEAKPFWQGCEERVAAGRELKPYVVSRLLRDEFGIKISESAVRNHFQNIAEANE
Ga0222718_100010983	F020902	GGA	MDEFYDGEFWDMVYQEYGVVDELDILSENVLEIIQPQPGLIILITKDFYDQK
Ga0222718_1000109836	F014085	N/A	MDNLSEMREQALKRAGNVCEWAYCTDNKWLELAHIKGIGMGGSKKRKFDFDNVAILCKHHHDIYDGRQRVGTSIAYRELLMGYLQRESKTI
Ga0222718_1000109842	F023355	N/A	MALPGAYVNRSNIPGQYCANCKYYSNNYCIAFKEQVAPYGWCKAWKGVEDEIRST
Ga0222718_1000109845	F050774	AGG	MSQIKIDTKTLVPIVLSALVAVIGWLFNTIEELQVAHAAMMEQLRILEKDLDMQESLFSELLFKIGG
Ga0222718_1000109848	F062777	N/A	MDFIIGFLLGYFFKETVSYLKRLAISTPKDWDKEWDWMSPIQEDDLP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10001098

Overview

Ecosystem & Geography

Associated Families

Sequences