Scaffold Ga0222718_10001016

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10001016
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28305
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (84.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F028792	Metagenome / Metatranscriptome	190	N
F029289	Metagenome / Metatranscriptome	189	N
F029934	Metagenome	187	N
F056143	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000101611	F002430	GGAG	MVTLKLPKKQVNAILVALDTEIDYTFDTHGRPDWETFPEFAAMLMAYYTTRCKFEEANETEVEDF
Ga0222718_1000101612	F056143	GAGG	MGKVKAWAMQLEEDFWYFANSKIGNCEYFGEFMQEMEQHRDFLGLHNDKEYAEMLREAWDNYWSKYI
Ga0222718_1000101614	F029289	GAGG	MRTAYECRHTLAYVSTSAITPRYPNAASDPRLTNTADKYFTLRRQIRDKEWNGKPVTNAERDKLATLKRDLNDDKHYTPNF
Ga0222718_100010168	F028792	AGGA	MSNRGNYKVRVRVTTEREVIVEADGFDEAEIKAMVEAVALVDGYDAEVLWAIEHGSLSDWEKKDGNDS
Ga0222718_100010169	F029934	GGAG	MATIVRTCLACDGGGIAEYDKPVTDFTNGGWITSTYGKCDVCDGEGDLHVLSEFTSLDMMLFLNEVAKILEDADIVDSKLDDIYGHVKDAKDKVRDYIKFHGYDGDDR