Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10000959 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10000959 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29201
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (89.74%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29201

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (89.74%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025294	Metagenome / Metatranscriptome	202	Y
F035273	Metagenome	172	Y
F040601	Metagenome	161	Y
F046983	Metagenome	150	Y
F085562	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_100009591	F085562	GAGG	MDEFTRKSTQHMDQKLVKQAIKAIDKSPELKKIRSIKDGMSYSEINSGVNDQQYKDNYDNIKWNKDKPKPKFKVRVNGKLINPDED
Ga0222718_1000095937	F040601	AGGAG	MANVHYVIKVIEPEREYLKTFIDQKLDNCRQLAQEYLWSCPAETKYIYVATRIKNA
Ga0222718_1000095938	F035273	AGGA	MHNPVYKVWDEQGKYMTRYQEQECYKITVRYPGTGRTLEFIGMDRGSCILQAEVAKEESDTVMLMESEEAVTLLKKEKI
Ga0222718_1000095939	F046983	AGGAG	MKLPEYLNKESTHTTIGVNTMSLIGLSLMWGHMTDMISLWFLPLTIITLLAGFGNEIRKR
Ga0222718_100009597	F025294	AGGAG	MEASNDTAVQPEIVEPVTDSANPVATEQSVATETKSDNNTTPSVEVKDGKTYVNGIRQYSRDDVNKISANAKNEVQKNILNELNVDSIDQVKQVVSTLQEVNPNEGSSLNVDSLRDAVKKREATVEELKSQVNSLKTDLMLKDHMGQLQNAMPGNWSAQQKESVIKLMKADGMLAVEGDTFAIRNGNDFLTTDGETPDYAKAIELVGKDKLGLSFGKKGVDVQYGETGLTDSGQGPKAYSTDKVNTDTEYRSAYMRIRHNQPGLAKSSITDAMVKKEMQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10000959

Overview

Ecosystem & Geography

Associated Families

Sequences