Scaffold Ga0222718_10000953

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000953
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29301
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (37.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029925	Metagenome / Metatranscriptome	187	Y
F042280	Metagenome / Metatranscriptome	158	Y
F060426	Metagenome	133	Y
F082523	Metagenome	113	Y
F092065	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000095311	F029925	AGG	MFILKSILNQAGSVWVVESIAMRKKDAERLLRRRAKTNDGSRRYGLFPANR
Ga0222718_1000095322	F060426	N/A	MIKNKTTLKGFDDLTFSQHGGFAKGKATQARLTFGHRDKDNQDQFTISVVQNQGNGTGLYGHADDNTYEVAMWFQDRDTMLPLSKYDDVLAHQTPLQVTQLMHQAQLNDFAWVNLLHSLRDQHRKDLDLD
Ga0222718_1000095358	F082523	N/A	MGGEAHTAFFRRTSETKESNTQLCKIFERIILASPVKKHMKFYANHIGQVHLYEKGGEDVPDWMKKTLRFDGTFELMISTYESWYEDADLYEGEREDSFLSLAKKFADLYSLNYYERGVYELEDELRKKGLTNSKA
Ga0222718_1000095369	F042280	GGA	MKIKNKWDEEFEVNVGDYVGFKCDIEQIGRVKEIQRRGALIVENKDGFDGDYIGGDTEALVGFDHVWSEA
Ga0222718_1000095370	F092065	N/A	MQEIIDKIYERMEFCANAHTNDQAEEQAYILELSCLNEVLDQIEGFPWNHYEN