Scaffold Ga0222718_10000929

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000929
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29783
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (76.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013719	Metagenome / Metatranscriptome	269	Y
F036686	Metagenome / Metatranscriptome	169	N
F039108	Metagenome	164	N
F041169	Metagenome	160	N
F091958	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000092915	F091958	GGAG	MGRNMDTVGDREYVMISSETWIDVKDLTVEIFKSKTGVEVRVLPRNSDNGVEPLGVIRADFISTTSKRQNVIPFFPRGHFNDPKR
Ga0222718_1000092938	F036686	GGA	MTTKLIKITTIKDCQAGSVGIMLAGEDHDVREDEANKLIDRGFAKLWSAKKAKAVEVDAD
Ga0222718_1000092939	F013719	AGG	MKIKCKRNILIGGIAHVVGDIVEVTDNVGLDLVNTGKVEVYEEKQGITDRAIGLTKKSASTLVKRNTKKK
Ga0222718_100009295	F041169	GGA	MEYVLFFEDEVDCGICGKATYAVVEANSGTINCTECDGIIFDARDCHGTVVILELDSETQ
Ga0222718_100009297	F039108	N/A	VAEEIECPECQGDGWLVYWVGKRGANDPCGSEVQDDCDACHGLGMIENPDWSG