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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021958 Open in IMG/M |
| Scaffold ID | Ga0222718_10000736 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33693 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (46.43%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.6183 | Long. (o) | -122.2916 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019751 | Metagenome / Metatranscriptome | 228 | N |
| F027831 | Metagenome | 193 | Y |
| F032237 | Metagenome / Metatranscriptome | 180 | Y |
| F037175 | Metagenome / Metatranscriptome | 168 | Y |
| F050004 | Metagenome / Metatranscriptome | 146 | Y |
| F053965 | Metagenome / Metatranscriptome | 140 | N |
| F069958 | Metagenome / Metatranscriptome | 123 | Y |
| F083376 | Metagenome / Metatranscriptome | 113 | N |
| F085538 | Metagenome / Metatranscriptome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222718_1000073610 | F085538 | N/A | LTSENTPFKISIGINYWDDPKGLVKILTNDSVYDYVYKIYVIDGRYEGRSDEPQNHQDYLKDLQEIYSKLHIVDMDGKKQIDKRNTYWRLAQIDDVDFMIVCDSDEYINFDVPKMESSLRTLLDRPEKCYPVMQHQQDIITMSRPRLFKGPFTFRHLQSEKENTISHGSLYEKDGTEIINQMYMWFKDHPKRQINSDNQSGVEGIEMWHNKEFRSKERVIADRVYYDENPSR |
| Ga0222718_1000073611 | F037175 | N/A | MPITYHTEHINHRMIQQTIFHTLANLYIRDLKGWLEKWDIHVWDVNDTRTAYFGHIKTTSGQKINPDMPSGVTGKYRMDLYLHDSQNVFKARENSDRVMHEVCHAILIGTPDFVSGVHNNINNRFTASFWYWDRFKYTKFYLSIIDIRKYTVQNLNRD |
| Ga0222718_1000073619 | F083376 | AGG | MLKIYLTEEADKLIESLDLGRVSLGESTKYTVYMKNTDPEWAIHNIKIENVNPELRFEAPETLQPNEVQEVHVYWTPKITNRKPLRAEFKFSGDIFIG |
| Ga0222718_1000073621 | F050004 | N/A | MVLYLKMDQKTWAQGDFTDSTTYDLTGVVYDENTFATARDISSFTGTLRLIDQNGDAVFTTTENLTLGADGTILIKFANGKAPRLQGTFKVRLRLEVSGSRLTCVGVNGSDEVYFEYD |
| Ga0222718_1000073624 | F019751 | GAGG | MTRSRGPEKSKELHEYVSSQWMFFGRNAYQISDQINKDTELMSKFGKTSPAGIHYHVKQIQEEMENSISEDAMDTYIGEFIRARLGFEQDVIALEEIMQDERNKGLDSMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPARPMPKVEDKDGSSI |
| Ga0222718_1000073644 | F032237 | N/A | MGENNFIDKTTSLKTVERVKFKLCPFSKGSKIEITWAFNPEDSAHIDQFLETDESKNEILMALNGFKKLAENNLGAKILTDE |
| Ga0222718_1000073650 | F053965 | GGAGG | MGKLADAIKEYKTSPSNSPAERDAKEIIIQITESQWWKDNVGSEFKWPKKYDTKSKQFGFREPQFIHFGNFIKPRCEFCERCGLDKQGLLTTNKGNMLYVQ |
| Ga0222718_1000073652 | F027831 | N/A | MAKKLSGIAYGQKNLQKGANDTTILVALKRFIREEFGLDFKREWYVGFDKEYGNLCRISESVGRKELERFKWKNPDLLCISDQFGIIIIELDGAVHDRKVQKTIERNILFRGAGIKLIVLNIADIKEFGETIEGHLAQELNKIVGQH |
| Ga0222718_1000073655 | F069958 | AGGA | MEYWEGINQGDYYLCDRCNVAKLSEYEYEGNHNPDNGNRYCTECANWIILKHYKCESCGNSGSHRSERILPMNCQCGETLCLR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |