Scaffold Ga0222718_10000640

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000640
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35761
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (39.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F010682	Metagenome	300	Y
F015724	Metagenome	252	Y
F039113	Metagenome	164	Y
F047028	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000064010	F008401	N/A	MEPTQFLTIAETAKLLNCSAGFVRKRIALTEANQSGGWPKEIFVNLQPNGAKSLYRVNQDALESYLNAQPEEAKVEETQVCSVI
Ga0222718_1000064013	F015724	GGCGG	MARRKGSDNFGFKSPNEKSPQSDFSFGGVRGASTTNQLNKIIPIKEKFRPNFNLKDFSVLYDYQYASMWTRWRRGYELYMYANQAYVGLNYSFRYFISGEAGVGAALPGICYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYAIKSILSTSTENVYAIELSSNFGAPISFFTGEVLSDRFNSDGTEKTTYNSYVVIGVGNGPNALVPNFAPIFNTIFISLDTDNSWKVVDNSTLKAPADLPTPGDYFSTEMRFGCNCPDYLGREDFNLYKYNTKRRYPYTEVQDLKPGSYDVGSNFTKPGENRDVDTRDYAGYTRDFGFIYIQKLLEISQYRDNEKVYSDPNLIYWRPRWCKHIYASFWDLQNRFGKDIIEPAWLNQPSDEPMDGAYLNQFYTNMDKQTSFKCREKRLSWWEKFSPSRNTTPVHMLYPDMNPTLVKVLNFDTLNSGTTNPLSPSGFEMFDIDQYNPFIPPDPETTPRIDGGQYLNGVLVSGASLTYDGGRYVNGVLIPYPSFPSITNGGTY
Ga0222718_100006402	F039113	N/A	MDIIKEIKQIKVAVESIDVSLQLLASENTGARRTSGFVSKRVVAQRLNIPSVTLDKLIHQGLVSNGKTGLVEGTHFCKIDPVEKNSSKFLYDIHSIIHSAWNNFKNG
Ga0222718_1000064022	F010682	N/A	MVYIPTTNWKYDKSLYHAIQSGPQRTGDNLDRTDTYLTFSSGYVMPNGVQQTYESVSSEGADFGVIRVGPPNISGYFNTEWRAVPPAISGYWTNYDNVNPHASGLLDSYVGFRAQGLYKTANSTVQTAIGPQPGLRNFGSFTWYGEQVPDNQLYSPFQTPRSNDNSSEGGGITGGGVTQPRLRAPALTNPTNDTTGSRAAWVYHYPIYCQSLIETRYSSAPGQMGSPTRNSYRGKSSRYVPNYGSIYGKLGEGVRNMVRTFSPGVNSSNQKSI
Ga0222718_100006403	F047028	GGA	MVNLSRGAQDLVKTLFKGEEKERMISAGVVRTILADMIKLYFEHKTAVGKGVLVFNPVQPELSNYLTVKDLENDLAVAQESMNRELEELFELIIKVIQKEDDNELALIAMIQDSEVAVHLIDPVEANKNIDELSNGIIF