Scaffold Ga0222718_10000549

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000549
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38388
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (69.84%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000379	Metagenome / Metatranscriptome	1211	Y
F000464	Metagenome / Metatranscriptome	1105	Y
F000681	Metagenome / Metatranscriptome	939	Y
F000724	Metagenome / Metatranscriptome	919	Y
F001205	Metagenome / Metatranscriptome	748	Y
F004235	Metagenome / Metatranscriptome	447	Y
F024645	Metagenome / Metatranscriptome	205	Y
F097143	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000054920	F004235	AGGAGG	MPITPNRTVNALIGEQTFIGKAITMIAVDWDVDADASREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINSFTSLDGTVTGTLAQVLVEDIINLGTVDSIDFTSGTVAVTLKTTFKYA
Ga0222718_1000054927	F000464	N/A	MGRISKQKIRMYSHHDPDLDIEDDFWPILGIITTVLGLWTGLVHLIDYFTFDTIPWWAEPFTIAPVLALVVMKERYDSLNPLHWWPMFCGYRVKLPSREIITIRPLDSERILKQHGGLLNVHIEDFETLKFRRRKDAVIFNLRHG
Ga0222718_100005493	F001205	N/A	MFNNVLGDWPTHERFIMTSCDDKYFQVYFPRFYKTYAEHWQLPIHVHIIDPSDTSMQRLDKLDVTYTHCTTDPAVLKWPYSYVTYCQAQRFILLGHNLLQGQSVTVADVDSYALRKPNETQKQTLESDMAFTEYNGRLMATFCNLHHSRRTNAKEAAIEMQRLIEDTDKIGVDQLVMKQIFKQLPYNNLKHGEWIRHRDVKTHADLQEHNNCLVYHEKGTRGKEKGLKIEWTDIGL
Ga0222718_1000054941	F097143	N/A	MIIETIFGIVLSAVGGGDAKADPATMVLKGLMTGNKIIQKEKNREIDDSIHEELHLMTKDFIYKIGEK
Ga0222718_1000054944	F000379	AGGA	MDKIDYSNKHDIMVGYIDRSDNVVAVETGWVTTPKHMTQVLMGQYNSKEMAQELVDSPTLMPTFKKDDYWYVDGFGDVIESNLSWNKEEMRKNVGHLFLFMKGTWQYSDNGIDWTPAVEEFKEVA
Ga0222718_1000054945	F024645	AGGAG	MLKNKKQFYITELEMSDDGDGLEFYSDHSGPFTLSKARKIMEKMFRSRSFNNFYNLTIRGPRHTNGYGHKTEFYSEKDR
Ga0222718_1000054952	F000681	AGGAG	MYKRDEHYNSKINKGLLYKELDTYYSAETDLVSNMMSYAITEGLVETRHELAVANEELWCLNDWPEDHGFGSSDRAEYLRRIKETIAFERKFLQAEQELITINRLTECPKNDTVRKYMAMNDKLKEGMVA
Ga0222718_1000054956	F000724	AGGAGG	MPKKEKVWTMGNKGPTGPWVWHVWTKGSKKPLRMVAFDHQHITDQLEGRQMVKAVKQPEEKDEYSTMPLGPKGSTVNRPADYDAGFRILREWIDQNGGPPEEIRIKLRELYIDYDVIPKKTTRYSARKKKRY
Ga0222718_1000054963	F000302	AGGAG	MIKTMTQDTKTRIADLERQKIELENQLELLGYSGNLVRMHQIEEEIYEIQDTIRKLLP