Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10000514 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10000514 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39530
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (85.45%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

39530

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (85.45%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F012779	Metagenome / Metatranscriptome	277	Y
F022317	Metagenome / Metatranscriptome	215	Y
F028814	Metagenome / Metatranscriptome	190	Y
F085553	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000051410	F022317	AGGAG	MSQIKIDTKTIIPIVLSAMLGAFGWVFNSIEEIKSHQNACDAMVMEINSELDMLESNFTELLFKLNG
Ga0222718_100005142	F028814	GGAGG	MGMLLMLKEGGSLGIDTIGNKPIDEDIDLLPDTGGGIEIDRQLMLWSDSGHALQYLDVDTLLLVGA
Ga0222718_1000051435	F085553	AGAAGG	MKTIYKEPKATIDGYTENEVLSVRNLNSTGSLRRIEGTRYDLIVSYNTPIAYVVDVENGTFLNETKVILSNHFYSMTTRKHQAKVKELYSMSAIGLFDLGGFFKRASIDGVDVNGGVNGGNNTNWLHA
Ga0222718_1000051452	F012779	GGA	MTEELNNSDTGEKNWKEMREKLNLYEAKIAEFEGKERQEVFNKAGLDTTKGVGKAVEMMYEGDMTVEGIQQYASHEFGVEFGNQDRLQDTVQATEQSQDRLNNIQQNSVVDLYNTDAVSEVRDIERTGSTRQSIAAKLSVMEEAKKNK
Ga0222718_1000051454	F003693	AGG	MIISKQALIDVSEDASNSVGFKLDGMLLCGIQFPATMTGSAVTFDFSLDNTNWADVKETDGTDVSYTISAGDAVRVDPSGWAFASNGYLRITSDGTEAADRSIIVHLRHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10000514

Overview

Ecosystem & Geography

Associated Families

Sequences