Scaffold Ga0222718_10000303

Overview

Basic Information

• Taxon OID: 3300021958
• Scaffold ID: Ga0222718_10000303
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53901
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.6183
  • Long. (^o): -122.2916
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F042621	Metagenome / Metatranscriptome	158	Y
F059985	Metagenome / Metatranscriptome	133	N
F059988	Metagenome / Metatranscriptome	133	Y
F067802	Metagenome / Metatranscriptome	125	N
F080618	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_1000030316	F067802	N/A	MIKEIYSRDIEAPKYNGDIIEVTDELQQLILKIENCLFTRQGDVLGSPNMGCNLDDLVFSLVLNESVIAQRISTQIQTYCLNSSSGQFGIDVRVQFYSTVDRNGCLVDIFVNEERVIGAL
Ga0222718_1000030318	F059988	GAGG	MNKFTEKRTGMPSVYKATYEEGWILKNQGNDYNENLMKNSFSNYMFRNERLAEFLNGYLRPIMTFWINKVKYLRIYYNFGVPKDYQKIN
Ga0222718_1000030319	F080618	N/A	MANNWQHLNFFDKNGKYYNFDYDTSSDKWTGSIYLPEVSIGLFEVGQLFILEEFIDKTTNTKKFGFPHGIEVPTGTTGSTNGVCNWVAEWQTTDPTEIFLFQFNMNFDSGTQTSLEIEPDGPPLQILSELEIPLDSDPTETVDPSGYTITDVIRSEALQINLAIRSEIENTFKRTLLIKDDCTGNVIAEILIWGETIGEDERLKVMTQNMGYNILESDSEVFRDTNIKEILPNFEEVNLKRKEIMMEGSNIYPFIGSYKGLINAIKFFGYDTLQVKEFWKNVDANSPQFGKYIQSNNIALFDPTVQFNDKKITLPNKRFRKTSLFSLVYRINEIIPNRYSEEDLPLTEENYDFTIEEILIKLFGLKKKLENEFLPLNARIKDITGEADFFGLLEVVNTNSRNKKCEITAGIDTNFKLSTDDCIYMEDLRSFSSFCLASEAIVNQAVLNFCNAYIAPLNSGSIGRNLVLGPISTGETYPPSPIGPDPNSPLGPLYDGNNVTVSGLADAFLAYFTRYSPKLSKIGVWPDGESSYYLPDKPGIPIGAMTVLENDSFNNITWDNVDSTWNQLNDANKFFTFDIDPQGVVAGDVFTINDPDTNTGATYTAVLGDTDVDVRNALYNQLINLKASFIDPWVFWDITQETVVTGAVVRLFGQNVDRLKVSCESNFGSQLLFNQLPGETLFTWSGIEKGNFEEIEWTIYKEATDISPSYYKVFRGPISQYNKVPLILPYVGTYSVEMKLYDLYNNISSNVKTDFICVENREVEYSGWYQSRKENYTWSSEGKYLWNDYGSLWNLPIAPTMTWDDETPSLYTSLNRVNAILNNFGLGTSPDFQLLNYQDDGKASFSGPYRWDNLTTGGWNDTYHLWWDMTSTTGDTPAFFQFAEVVPETYLKITDINGETAEHYFDLSTTTLAQAAAGLNTSTNKIINKYVYNVVYDASSNQKFIQAVCRYFGVHGDWTYLDIVYTNGDRVCPSTGVTGSPFPTGSTGCPSLIYRKGLHKASNPTWSTAKFINNGKTLPKMTWLMFVYDKCKIPGKGEPRWIIKNTTNSNMADIYFESKYLTYLFKESGKYEITLELTDTNGNKYKKGRNILVIK
Ga0222718_100003032	F042621	GGA	MEKTEDKKLQWIKGDKFGTVEIIKGVEGDWTTFHSGNRIATNLISEFLEPLDGDPLDLNPSPPAVTKAAEVYKEKLPPQKETPSPIRTLFDKQKKNDKVKLNLTFPIEVPKKAIYEIISSSFDSNEVNDELESFIKNQISEDLILDSLFDSIKELIKTRYKID
Ga0222718_100003034	F059985	N/A	MIKIVLEPARNGVIKRVIDDNHGGGREQWTSTDVFESNEDSRNKYEYIMRFFFELCEDLGLECGNKFEKDVLKINTEWGTHYEPTQKEIQSKIKELQAEIDLLTEWKQT
Ga0222718_100003035	F008190	N/A	MEANIEFNFIYSNDAVRVKSFLGSVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTVLDRNTTTSIFYVLGNLNEPTVEGIKRYVESLTDKEFQYNIYHSPDINVNGSAKLFENVVEFE
Ga0222718_100003036	F004606	GGA	MKAHRIFTKGQTVYCLLSSFSKPNVLLPIKGLIVDTQWDPINPLYQIRIIKMYDNMKYLKTHFFDMNFKYEFNNRARKMPIKKEDFKNVKSLEDRFDESDRERLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNVRFKRGWLDKFQSGDIDIDKYLDSLG