Scaffold Ga0222718

Basic Information
Taxon OID	3300021958 Open in IMG/M
Scaffold ID	Ga0222718_10000183 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021958 Open in IMG/M

Scaffold ID

Ga0222718_10000183 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63770
Total Scaffold Genes	114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	87 (76.32%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

63770

Total Scaffold Genes

114 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

87 (76.32%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.6183	Long. (^o)	-122.2916	Alt. (m)	Depth (m)	12
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.6183

Long. (^o)

-122.2916

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F007006	Metagenome / Metatranscriptome	360	Y
F053555	Metagenome	141	N
F072868	Metagenome	121	Y
F104790	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222718_10000183112	F053555	GGAG	MTTSLEDWKLQANTWIEIAYSCTLTPLLPKYQYHVIDRCLRGASDVISAESTSVHSNTASLIQWCKLWSSEALFKYQSIKDDLTEQRGGKPPTHRQICNARDERGKRWFTCEHEYPILIPKKGIRDQGWTLQQLRDWMWRYSKVTIILNLENDRLLPWTEDMSVAAKRYENAGIVVCEHPQYRID
Ga0222718_1000018339	F072868	GAGG	MFFKLASKNAYRDLVRNARRISISELSDSEKSEAFTELYTLLKPRLGETSRTLNAEAAYAKRCIFQNAVNQAEIKPVQNVRNPWLTFKREFESAIQSKNPSSVSRALAWFYYQPHRDDWLAF
Ga0222718_1000018344	F007006	GAGG	MEPALKAELKQEISRIVDLMVQAEAIREQIASLKKDIKTEYGLPVATITKVASIIRKQNLDEEEEKWEEIKEFVDACS
Ga0222718_1000018345	F005315	N/A	MYSACASKVIPICSQRLFNPSCLKAGFGASKLGIDQELPTIKISSMLIITCGDSYTQGEGLSDKQQAYPYLISQNAELKNLSQSGASEYLITTQVEEAVKLKPDLIVVGHTNEYRWQIWDFRNNCTQGFIVANHVLQNEKYYRNWILSEQILGNRRKNTKEHQAAWHAAGMLYFSEEKLVQQLWSGAVSKQIILAQKAKIPIVHHCCFGHLQPLLEELTDDYIKFHLDNEKHKDPAPDQSHAGPDSHIKLATMLKNKHQQIL
Ga0222718_1000018373	F104790	GGAG	MAVRKLVKASNGTKSWKSMSSSVKRRVTDDWCAFYTPMGRMVSKPAGRRPRHMHPEEWCADKTPFKGKVIRSF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222718_10000183

Overview

Ecosystem & Geography

Associated Families

Sequences