NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10000023

Scaffold Ga0222718_10000023


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10000023 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)176603
Total Scaffold Genes223 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (28.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012280Metagenome / Metatranscriptome282Y
F022286Metagenome / Metatranscriptome215Y
F059355Metagenome / Metatranscriptome134Y
F062786Metagenome / Metatranscriptome130Y
F097386Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_10000023121F062786N/AMNEKEFVDWLRGFTSGVHHYNITPSQWDYLKEVLKTVGSSNIADYSTGNWTLNHTWEQ
Ga0222718_10000023176F059355AGGMKLITIIEQILFNTYEGMVRVMFKEGESENLAELLRALPGVTTVTNAGSSAEMGAMTFKVKLISQKEASEAFNSFKNNATSKYPNIIKIEIAEETIEKK
Ga0222718_1000002318F097386N/AMTYSEKKQASKNILEAIYGLKNNETIKVIYGTGYKGEPNVYYIKAYWSKYSKEFSYSIWSSFSGMNIDSLGPTMAKAYTYDMMSQRTTYNFPLYKMEIVKEEVAS
Ga0222718_10000023193F012280GGAMPAKLKPSTKQYDKDKRGKMLNTFTWIHYTPSNTSTEELKKMYESNSYRKKKNIIKRELLRRNAL
Ga0222718_10000023203F022286GGAMRLSHVILGEILYYDPDFEKQVDKILDQGGKHLGSGDYGSAYLLNGRVYKVTTDEIELEHAQLLKGKKTNNFARIYDVEVINPKLGIIQMEVLGEFKGNIPEEWIDAVEREAQQYGINPDELDIRPSNVMVNQKKHLKLVDI
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