NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10509038

Scaffold Ga0222717_10509038


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10509038 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052887Metagenome142N
F060431Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_105090381F052887N/AMSKIDHEINQYLFVRTNIVNILADAAVAERFIRAPNNNRCPSMYQMLETYYDKKDWGYHVEPKLKLRGTPKQMQNYDTAID
Ga0222717_105090382F060431N/AVQKHTAYVRLVDVAGLFQLTTKEVEEILIKFCQIKVNDLPLINITKEKYTTYSMPSHKNFLEKIGFKQNNSYKGFKAINGYLNQVHTKEQKIIKKYLYPGLDYWDLLDKLESLPAEEFKKITKEQLQYPWVLKDVKNRS
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