NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10180342

Scaffold Ga0222717_10180342


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10180342 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1265
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079926Metagenome115N
F090391Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_101803422F090391AGGAGMKDTVKINRDALEQLTDFVRKDIKVAHLETSDNEDLTYIINVTNALMAGKYSLELYKNENHVFIEIEQLEFLTEHTQDSFDFIAPDTDWNCLSDMLATNLLASAILEARQAMQIEPEIKEEKSK
Ga0222717_101803423F079926AGGAGMTTKVVAQPWYDMAIQDKFSIQVDELTFHILDELGKPIVNDDLTPMKFRSLRELDFVTDYLELDDLEVIQ
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