Scaffold Ga0222717_10131414

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10131414
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1541
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015661	Metagenome / Metatranscriptome	253	Y
F038855	Metagenome	165	Y
F059950	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_101314142	F015661	AGG	MDIATIGWVWLGITIGIPLGLIVTVFLTQSKINDLESELVHQRFVRDSLKEEIFRLDNQVKPQPRKKRNTKKVND
Ga0222717_101314145	F038855	GAG	MSKLTKEQQKELEILAAEIEAEAIQMKLDYEQTPSEESGSIVVVHENAKILDEEE
Ga0222717_101314146	F059950	N/A	MLYVMIDKNYEIVNTIEADSLNHAIEYFVSRKQFVDKDTFDSLYKVLSKQEYNLNQEAFGRKPSSEQIQWWKDEETYLDVEAPITQSNHE