Scaffold Ga0222717_10122670

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222717_10122670

Scaffold Ga0222717_10122670

Overview

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10122670 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1606
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)		Depth (m)	38
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025038	Metagenome / Metatranscriptome	203	N
F048992	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_101226702	F025038	GAG	MVGIVGVMKLNQVNKNSRRLFVEDEYNLYDLKKARPFWHNVCTVNGWEIVKDEEDFKEDYVCKINNELYFMELQVVGYWHNFDLSKISNVRISASKVKLLKEKGNGGLIFLNCVPNKFFAINVNQVTPEMKKDSVREQFYEIPLRTINPKEVNVLDTNYCDCLENHLKIMQRSEGRMAFAQKDYNIRGNNGICC
Ga0222717_101226703	F048992	GAGG	MEYAADDINYGYMSILMHINSEYTLIDKIENIREIDGTIVHPIFGTNKGGVTFTLFLRGFYTVFEAVMNFGNRFDVYVVNEQGNTTMIDENLDHLISLLHILYINKKAEEDDLLNRALNPHTYRKVAKKMFYNEDPP

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