Scaffold Ga0222717_10111524

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10111524
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1702
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F005038	Metagenome / Metatranscriptome	414	Y
F052889	Metagenome	142	Y
F053631	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_101115241	F004629	N/A	PSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPKMKIRLNGEQLQVYEFCILLLVKASEKDRDIISLRNFPYKRSFRQLKRFFLPISHEQCRIKYYNALYELLKLYHLKGKAYFLK
Ga0222717_101115244	F052889	AGGAGG	MQSKTDHIYSTAIAYACYKSGAKRVDDNLLKSMFKDLCLLSDEYAFDYKQELKKILKEG
Ga0222717_101115245	F005038	AGGAGG	MKAKDINIYNIFSATYKKRKMFSFIGFGELSLMPKLNRPIRQISNIYQFPIKSYYNQKRRVK
Ga0222717_101115247	F053631	GGAGG	MIRSIYFALCFGLALFGLLVVTHISIPIGLIMFFIFIIKFLLMLPKYQED