Scaffold Ga0222717_10097293

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10097293
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1842
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F025387	Metagenome / Metatranscriptome	202	Y
F050676	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100972933	F025387	GGA	MKRIEKVGEMLVRVITYPIRATIGVCQCIHKSTPDTLDDCMPFEIKKKEDKDADKTTS
Ga0222717_100972934	F050676	AGGAGG	MQTKLPVKSRVADKYQPMLTYYAELIGLCHETVAKTQSLQMLDPMGKKTTATSLFIRVCQRMDKSIDAKEVAEKLETISKTNEQRSHVA
Ga0222717_100972935	F003834	AGGAG	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVKVLYDDHAKFANEMDSILLQKKGKLDNAIHVLEDKLEQWKKVRKWKEEISHSLLKEPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDNEMGKEKINTNTIPKPEFLSITK
Ga0222717_100972936	F003677	AGG	MVDEALYFFEKDVGKKVYEMEYEVTYVTKWQVLAEDKDQAFNIWLENHKVALATEDGKDCVCSYVKDYTQIGSTKEIAKIKLDIDNDEVIADES