Scaffold Ga0222717_10082530

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10082530
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2030
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010357	Metagenome / Metatranscriptome	305	N
F015604	Metagenome / Metatranscriptome	253	Y
F038420	Metagenome / Metatranscriptome	166	Y
F050660	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100825302	F050660	GGAGG	MEKAKMPKMAEKTKATLCKEIGQSMKLSQSEMTSLERTSKEMLLKIQSWIS
Ga0222717_100825303	F038420	AGGAG	MSNLAIQDLYQRKIDEASEMSNRELITELKGSITGIRAMPRDDMIEIVAMKLSNAELRDE
Ga0222717_100825305	F015604	AGGAG	MNNKILQQKINRRKSLIADLPFDKEGVTFNNPSMTVEQGMAKATRLALKGVEANSLNLWQLRGGK
Ga0222717_100825306	F010357	AGGAG	MYLDVKYKFRPNPKCRAEVVRYVETMYSFREVKSKCGQTDVDGGRVLCDACCELADNMEREKW