Scaffold Ga0222717_10080524

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10080524
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2060
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F072524	Metagenome	121	Y
F084722	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100805242	F072524	N/A	MSVKMSIKGTALEYFNIKINNGFTVEDLAYLILGWEDNIDKIKKIKSYSKLMTIAKKQLLDKGLMFLECAWEHLDYIDNMEDVHRQVMQHIKDVEPTKYLGKTKDEIKQIKLEKQFIDNMNVINGIK
Ga0222717_100805244	F084722	N/A	MLISFIDNYNPGENMTKIYMAIRFPKNWNKKKEIKVMTLEEHLKKYNSICDNIGDGLQLFLNEDEAKKHLIKVNK
Ga0222717_100805245	F002485	AGGAG	MTRLLRTTKNLYSEIVGDKEIFYSYNTTVAVKTPIETYVSENVWSTTTGRHLTWIEQDTNTDREYRMRYQDFRNFCINNNVNKFYR