NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10068867

Scaffold Ga0222717_10068867


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10068867 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2260
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004603Metagenome431Y
F009521Metagenome / Metatranscriptome316Y
F062678Metagenome130N
F063076Metagenome / Metatranscriptome130Y
F080492Metagenome115N
F105890Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100688671F004603AGGAMIFSININGSIVDWCYNLDCQDKQYHKTWIPKLRDIQIITKNLNGLTISEVKKIILEDIQPDITMVKEHNNKLARARRIGT
Ga0222717_100688672F105890GGAMTILIHKTEASRLAYEVSKLNVQEIWEFVDTLKNLEDVANTTGQGNFNFSAVKQRITFNEFKED
Ga0222717_100688673F062678AGGCGGMTQQDQNALKKLKRKYPGLPVVGGPKDWERIEKMLSKEDFELYKLITKRDQD
Ga0222717_100688674F063076AGGMIYINRKDDFGNLETVDQFNQGRKYAKEMLKEYRLSDSGAYYYISQRPCKNWKLEAVTQ
Ga0222717_100688675F009521AGGTGGMKYQIIINNGTLKGFIAFKGPCLATMQDKFKRLEQQGHKLKLIRGK
Ga0222717_100688677F080492N/AVAFRGRSLAITRSDTEKNMNKVHHTQYKKNYKNYILDCLETEDELIGKNLSDDEKINYLFDRFGNEYGFQIERMGEHRAMTEWLSGLAINIPYTHFDIIELAVDMGSIDNNPSEALKDKVIENYFSFMANVILSFKSKEVA
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