Scaffold Ga0222717_10051519

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10051519
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2666
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F004850	Metagenome / Metatranscriptome	421	Y
F023317	Metagenome / Metatranscriptome	210	Y
F034346	Metagenome / Metatranscriptome	175	Y
F086293	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_1005151910	F023317	N/A	MNNLNTTIDKVAMSEFDMHYYQLGDNEKQWCNDEMVNNPKWLNPFWKQEGYQSETDKLCEELGILNYKNK
Ga0222717_1005151911	F001740	N/A	MYNSNNPSNWSWSKAFDEMEKTVNQAELTQQCINHVLNYPGEANGVFMTLSKSQQDDVYELLNQVL
Ga0222717_100515195	F034346	N/A	MIKAIKIIAIKAVEEKMLKIYATIMTTVFLAIWIPTMAIVLKNIFTQVILPIFK
Ga0222717_100515198	F004850	N/A	MIDNFEFEIYYGDLEEPLYLTNDKNYICDEMRDFMEELGIDLNEVIYKVQEI
Ga0222717_100515199	F086293	N/A	MNKLIIAGMVASGFLGYNIKEDGTRVEKALENVQYIKSWVHEDLNSGLMDTLYADYYITALNETENLLITQINK