Scaffold Ga0222717_10048239

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10048239
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2768
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008387	Metagenome	334	Y
F070653	Metagenome	123	N
F087744	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100482392	F070653	GGA	MQTQIEVKHPLQVIIKNVYGMERIYPLNATAKIFTSLTRKKTLERDEINEIKRLGYTVEVVSEKL
Ga0222717_100482393	F008387	GGA	MLTVIKWVLLLLCSVMGMVILATDPNQQSLGLILAFGCFLLFALDVAKSFID
Ga0222717_100482396	F087744	GAGG	MSKNILVTFNMQIGDYEHSDKYIFHNKTTDYKYCKQFWSLKKKNKLDEGVYWDNQGLNAISVYSSQEITNEEVKTLQKLGVVYGLER