Scaffold Ga0222717_10041154

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10041154
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3024
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022761	Metagenome	213	Y
F077184	Metagenome	117	Y
F083396	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100411541	F022761	N/A	MKLKKYNIAITKPWSSEMYAHNDEVLKEVIEKVKAKWLHAYHDSENEYYIGSSDSDNEFQDAPWNHEANTIMQNIQEAVLVTTYGSGFTMHDVHNDVHLELEAIAYWRAKEVAEDLSLLLSKEFIGLG
Ga0222717_100411544	F083396	N/A	MSKEDEYHNANQAETLDKFRRVLMNVFDGDADAMLGNLEKRMVENEDYETAAQMRDIRSRINE
Ga0222717_100411547	F077184	AGGA	MKRKMRTYRITSSILMVICVVLLIKSNSHNIEKADIVDKYFDLQSEYDKIYDDVQQLEVYSERLENQIDILSSFIADSEYEIDTVTNGKK