Scaffold Ga0222717_10033200

Overview

Basic Information

• Taxon OID: 3300021957
• Scaffold ID: Ga0222717_10033200
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3406
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.0966
  • Long. (^o): -122.4216
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F051963	Metagenome / Metatranscriptome	143	N
F078735	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100332002	F002260	AGGA	MSVPYQRISDANISDIIFYDPSAERRASQMQVDWDNYFKVGSQEILYWLEFGWWPQYCDTVMGATMYSNLPNGQMISAFNPNLLIKNDQTLIRLDTFMAVKIFYESIVSDTSNVNSVDAANYGHALERFEKEQEKALQLSNFYDLFQDAPDGPTTKLEENWTADPDYFNNNRRWF
Ga0222717_100332003	F051963	AGGAG	VALSNLPLVDKAKVVTYLRDVAKIQTPIIEVSGTFPSEDDNIAYGLYVDDVTDNGRSINQLGVQSCASMYNAEDQFNILYISFQNDPQAPVILNSINNLAANVNFFDGYTSVEFDRDVTIGQRSEIHNYTFTLTRLEFNNAYQS
Ga0222717_100332005	F003807	GAGG	LSTSLLFNKLNKDKQMSETHDVWLKSDDEKLRSLISDEAKMIPMLENMQATVRQLKAKQQFRLALLNQLLEDLDKNDSTK
Ga0222717_100332007	F078735	N/A	MKSAKMASIMQIDGIGKRYGLLPSQVIKDADTFDLYIMDAAMSFEQYHQKKQIDGKAPIPNYTEDQLLEILGK